* Sebastian Hammer, Adam Dickmeiss
*
* $Log: extract.c,v $
- * Revision 1.61 1996-06-06 12:08:37 quinn
+ * Revision 1.72 1997-07-15 16:32:29 adam
+ * Bug fix: Match handler didn't terminate the resulting string!
+ *
+ * Revision 1.71 1997/07/15 16:28:41 adam
+ * Bug fix: storeData didn't work with files with multiple records.
+ * Bug fix: fixed memory management with records; not really well
+ * thought through.
+ *
+ * Revision 1.70 1997/07/01 13:00:42 adam
+ * Bug fix in routine searchRecordKey: uninitialized variables.
+ *
+ * Revision 1.69 1997/04/29 09:26:03 adam
+ * Bug fix: generic recordId handling didn't work for compressed internal
+ * keys.
+ *
+ * Revision 1.68 1997/02/12 20:39:45 adam
+ * Implemented options -f <n> that limits the log to the first <n>
+ * records.
+ * Changed some log messages also.
+ *
+ * Revision 1.67 1996/11/15 15:02:14 adam
+ * Minor changes regarding logging.
+ *
+ * Revision 1.66 1996/11/14 09:52:21 adam
+ * Strings in record keys bound by IT_MAX_WORD.
+ *
+ * Revision 1.65 1996/11/14 08:57:56 adam
+ * Reduction of storeKeys area.
+ *
+ * Revision 1.64 1996/11/08 11:10:16 adam
+ * Buffers used during file match got bigger.
+ * Compressed ISAM support everywhere.
+ * Bug fixes regarding masking characters in queries.
+ * Redesigned Regexp-2 queries.
+ *
+ * Revision 1.63 1996/10/29 14:09:39 adam
+ * Use of cisam system - enabled if setting isamc is 1.
+ *
+ * Revision 1.62 1996/10/11 10:57:01 adam
+ * New module recctrl. Used to manage records (extract/retrieval).
+ * Several files have been moved to the recctrl sub directory.
+ *
+ * Revision 1.61 1996/06/06 12:08:37 quinn
* Added showRecord function
*
* Revision 1.60 1996/06/04 10:18:12 adam
#include <unistd.h>
#include <fcntl.h>
-#include <alexutil.h>
#include <recctrl.h>
#include "index.h"
void key_open (int mem)
{
+ if (!mem)
+ mem = atoi(res_get_def (common_resource, "memMax", "4"))*1024*1024;
if (mem < 50000)
mem = 50000;
key_buf = xmalloc (mem);
}
}
+#define SORT_EXTRA 0
+
+#if SORT_EXTRA
+static int key_y_len;
+
+static int key_y_compare (const void *p1, const void *p2)
+{
+ int r;
+
+ if ((r = key_compare (*(char**) p1 + key_y_len + 1,
+ *(char**) p2 + key_y_len + 1)))
+ return r;
+ return *(*(char**) p1 + key_y_len) - *(*(char**) p2 + key_y_len);
+}
+
+static int key_x_compare (const void *p1, const void *p2)
+{
+ return strcmp (*(char**) p1, *(char**) p2);
+}
+#endif
+
void key_flush (void)
{
FILE *outf;
char out_fname[200];
char *prevcp, *cp;
struct encode_info encode_info;
+#if SORT_EXTRA
+ int i;
+#endif
if (ptr_i <= 0)
return;
key_file_no++;
logf (LOG_LOG, "sorting section %d", key_file_no);
+#if !SORT_EXTRA
qsort (key_buf + ptr_top-ptr_i, ptr_i, sizeof(char*), key_qsort_compare);
- sprintf (out_fname, TEMP_FNAME, key_file_no);
+ getFnameTmp (out_fname, key_file_no);
if (!(outf = fopen (out_fname, "w")))
{
else
encode_key_write (cp + strlen(cp), &encode_info, outf);
}
+#else
+ qsort (key_buf + ptr_top-ptr_i, ptr_i, sizeof(char*), key_x_compare);
+ getFnameTmp (out_fname, key_file_no);
+
+ if (!(outf = fopen (out_fname, "w")))
+ {
+ logf (LOG_FATAL|LOG_ERRNO, "fopen (4) %s", out_fname);
+ exit (1);
+ }
+ logf (LOG_LOG, "writing section %d", key_file_no);
+ i = ptr_i;
+ prevcp = key_buf[ptr_top-i];
+ while (1)
+ if (!--i || strcmp (prevcp, key_buf[ptr_top-i]))
+ {
+ key_y_len = strlen(prevcp)+1;
+#if 0
+ logf (LOG_LOG, "key_y_len: %2d %02x %02x %s",
+ key_y_len, prevcp[0], prevcp[1], 2+prevcp);
+#endif
+ qsort (key_buf + ptr_top-ptr_i, ptr_i - i,
+ sizeof(char*), key_y_compare);
+ cp = key_buf[ptr_top-ptr_i];
+ --key_y_len;
+ encode_key_init (&encode_info);
+ encode_key_write (cp, &encode_info, outf);
+ while (--ptr_i > i)
+ {
+ cp = key_buf[ptr_top-ptr_i];
+ encode_key_write (cp+key_y_len, &encode_info, outf);
+ }
+ if (!i)
+ break;
+ prevcp = key_buf[ptr_top-ptr_i];
+ }
+#endif
if (fclose (outf))
{
logf (LOG_FATAL|LOG_ERRNO, "fclose %s", out_fname);
char *buf;
char prevAttrSet;
short prevAttrUse;
+ int prevSeqNo;
} reckeys;
static void addRecordKey (const RecWord *p)
short attrUse;
size_t i;
int lead = 0;
+ int diff = 0;
if (reckeys.buf_used+1024 > reckeys.buf_max)
{
lead |= 2;
else
reckeys.prevAttrUse = attrUse;
+#if 1
+ diff = 1 + p->seqno - reckeys.prevSeqNo;
+ if (diff >= 1 && diff <= 15)
+ lead |= (diff << 2);
+ else
+ diff = 0;
+#endif
+ reckeys.prevSeqNo = p->seqno;
*dst++ = lead;
case Word_Numeric:
*dst++ = 'n';
}
- for (i = 0; p->u.string[i]; i++)
+ for (i = 0; p->u.string[i] && i < IT_MAX_WORD-3; i++)
*dst++ = p->u.string[i];
*dst++ = '\0';
- memcpy (dst, &p->seqno, sizeof(p->seqno));
- dst += sizeof(p->seqno);
+ if (!diff)
+ {
+ memcpy (dst, &p->seqno, sizeof(p->seqno));
+ dst += sizeof(p->seqno);
+ }
reckeys.buf_used = dst - reckeys.buf;
}
{
char attrSet = -1;
short attrUse = -1;
+ int seqno = 0;
int off = 0;
if (zebTargetInfo_curDatabase (zti, databaseName))
{
const char *src = reckeys->buf + off;
struct it_key key;
- int lead;
+ int lead, ch;
lead = *src++;
++ptr_i;
key_buf[ptr_top-ptr_i] = (char*)key_buf + key_buf_used;
- lead = zebTargetInfo_lookupSU (zti, attrSet, attrUse);
- if (lead < 0)
- lead = zebTargetInfo_addSU (zti, attrSet, attrUse);
- assert (lead > 0);
- ((char*) key_buf) [key_buf_used++] = lead;
+ ch = zebTargetInfo_lookupSU (zti, attrSet, attrUse);
+ if (ch < 0)
+ ch = zebTargetInfo_addSU (zti, attrSet, attrUse);
+ assert (ch > 0);
+ ((char*) key_buf) [key_buf_used++] = ch;
while (*src)
((char*)key_buf) [key_buf_used++] = *src++;
src++;
((char*)key_buf) [key_buf_used++] = '\0';
-
((char*) key_buf)[key_buf_used++] = cmd;
- memcpy (&key.seqno, src, sizeof(key.seqno));
- src += sizeof(key.seqno);
+ if (lead & 60)
+ seqno += ((lead>>2) & 15)-1;
+ else
+ {
+ memcpy (&seqno, src, sizeof(seqno));
+ src += sizeof(seqno);
+ }
+ key.seqno = seqno;
key.sysno = sysno;
memcpy ((char*)key_buf + key_buf_used, &key, sizeof(key));
key_buf_used += sizeof(key);
int off = 0;
int startSeq = -1;
int i;
+ short attrUse;
+ char attrSet;
+ int seqno = 0;
for (i = 0; i<32; i++)
ws[i] = NULL;
while (off < reckeys->buf_used)
{
- const char *src = reckeys->buf + off;
- char attrSet;
- short attrUse;
- int seqno;
- const char *wstart;
-
- memcpy (&attrSet, src, sizeof(attrSet));
- src += sizeof(attrSet);
- memcpy (&attrUse, src, sizeof(attrUse));
- src += sizeof(attrUse);
+ const char *src = reckeys->buf + off;
+ const char *wstart;
+ int lead;
+
+ lead = *src++;
+ if (!(lead & 1))
+ {
+ memcpy (&attrSet, src, sizeof(attrSet));
+ src += sizeof(attrSet);
+ }
+ if (!(lead & 2))
+ {
+ memcpy (&attrUse, src, sizeof(attrUse));
+ src += sizeof(attrUse);
+ }
wstart = src;
while (*src++)
;
-
- memcpy (&seqno, src, sizeof(seqno));
- src += sizeof(seqno);
-
-#if 0
- logf (LOG_LOG, "(%d,%d) %d %s", attrSet, attrUse, seqno, wstart);
-#endif
+ if (lead & 60)
+ seqno += ((lead>>2) & 15)-1;
+ else
+ {
+ memcpy (&seqno, src, sizeof(seqno));
+ src += sizeof(seqno);
+ }
if (attrUseS == attrUse && attrSetS == attrSet)
{
int woff;
fname, rGroup->groupName ? rGroup->groupName : "none");
return NULL;
}
+ *dst = '\0';
return dstBuf;
}
struct recordLogInfo {
const char *fname;
- char *op;
+ int recordOffset;
struct recordGroup *rGroup;
};
if (level & LOG_LOG)
return ;
- if (p->op)
- fprintf (outf, "%s of ", p->op);
- fprintf (outf, "%s type %s\n", p->rGroup->recordType, p->fname);
+ fprintf (outf, "File %s, offset %d, type %s\n",
+ p->rGroup->recordType, p->recordOffset, p->fname);
log_event_start (NULL, NULL);
}
Record rec;
struct recordLogInfo logInfo;
- logInfo.fname = fname;
- logInfo.op = NULL;
- logInfo.rGroup = rGroup;
- log_event_start (recordLogPreamble, &logInfo);
-
if (fi->fd != -1)
{
/* we are going to read from a file, so prepare the extraction */
reckeys.buf_used = 0;
reckeys.prevAttrUse = -1;
reckeys.prevAttrSet = -1;
+ reckeys.prevSeqNo = 0;
recordOffset = fi->file_moffset;
extractCtrl.offset = recordOffset;
extractCtrl.readf = file_read;
extractCtrl.seekf = file_seek;
extractCtrl.endf = file_end;
- extractCtrl.group = rGroup;
+ extractCtrl.map_chrs_input = map_chrs_input;
+ extractCtrl.flagShowRecords = rGroup->flagShowRecords;
+ if (rGroup->flagShowRecords)
+ printf ("File: %s %ld\n", fname, (long) recordOffset);
+
+ logInfo.fname = fname;
+ logInfo.recordOffset = recordOffset;
+ logInfo.rGroup = rGroup;
+ log_event_start (recordLogPreamble, &logInfo);
+
r = (*recType->extract)(&extractCtrl);
+ log_event_start (NULL, NULL);
+
if (r)
{
/* error occured during extraction ... */
- logf (LOG_WARN, "Couldn't extract file %s, code %d", fname, r);
+ if (!rGroup->flagShowRecords &&
+ records_processed < rGroup->fileVerboseLimit)
+ {
+ logf (LOG_WARN, "fail %s %s %ld code = %d", rGroup->recordType,
+ fname, (long) recordOffset, r);
+ }
return 0;
}
if (reckeys.buf_used == 0)
{
/* the extraction process returned no information - the record
- is probably empty */
- logf (LOG_WARN, "Empty file %s", fname);
+ is probably empty - unless flagShowRecords is in use */
+ if (rGroup->flagShowRecords)
+ return 1;
+ logf (LOG_WARN, "No keys generated for file %s", fname);
+ logf (LOG_WARN, " The file is probably empty");
return 0;
}
}
logf (LOG_LOG, "Cannot delete new record");
return 1;
}
- logInfo.op = "add";
- if (rGroup->fileVerboseFlag)
- logf (LOG_LOG, "add %s %s+%ld", rGroup->recordType,
+ if (records_processed < rGroup->fileVerboseLimit)
+ logf (LOG_LOG, "add %s %s %ld", rGroup->recordType,
fname, (long) recordOffset);
rec = rec_new (records);
*sysno = rec->sysno;
if (deleteFlag)
{
/* record going to be deleted */
- logInfo.op = "delete";
if (!delkeys.buf_used)
{
- logf (LOG_WARN, "cannot delete; storeKeys false");
+ logf (LOG_LOG, "delete %s %s %ld", rGroup->recordType,
+ fname, (long) recordOffset);
+ logf (LOG_WARN, "cannot delete file above, storeKeys false");
}
else
{
- if (rGroup->fileVerboseFlag)
+ if (records_processed < rGroup->fileVerboseLimit)
logf (LOG_LOG, "delete %s %s %ld", rGroup->recordType,
fname, (long) recordOffset);
records_deleted++;
else
{
/* record going to be updated */
- logInfo.op = "update";
if (!delkeys.buf_used)
{
- logf (LOG_WARN, "cannot update; storeKeys false");
+ logf (LOG_LOG, "update %s %s %ld", rGroup->recordType,
+ fname, (long) recordOffset);
+ logf (LOG_WARN, "cannot update file above, storeKeys false");
}
else
{
- if (rGroup->fileVerboseFlag)
+ if (records_processed < rGroup->fileVerboseLimit)
logf (LOG_LOG, "update %s %s %ld", rGroup->recordType,
fname, (long) recordOffset);
flushRecordKeys (*sysno, 1, &reckeys, rGroup->databaseName);
xfree (rec->info[recInfo_storeData]);
if (rGroup->flagStoreData == 1)
{
- rec->size[recInfo_storeData] = fi->file_max;
- rec->info[recInfo_storeData] = xmalloc (fi->file_max);
+ int size = fi->file_moffset - recordOffset;
+ if (!size)
+ size = fi->file_max - recordOffset;
+ rec->size[recInfo_storeData] = size;
+ rec->info[recInfo_storeData] = xmalloc (size);
if (lseek (fi->fd, recordOffset, SEEK_SET) < 0)
{
logf (LOG_ERRNO|LOG_FATAL, "seek to %ld in %s", fname,
(long) recordOffset);
exit (1);
}
- if (read (fi->fd, rec->info[recInfo_storeData], fi->file_max)
- < fi->file_max)
+ if (read (fi->fd, rec->info[recInfo_storeData], size) < size)
{
logf (LOG_ERRNO|LOG_FATAL, "read %d bytes of %s",
fi->file_max, fname);
sprintf (ext_res, "%srecordType", gprefix);
if (!(rGroup->recordType = res_get (common_resource, ext_res)))
{
- if (rGroup->fileVerboseFlag)
+ if (records_processed < rGroup->fileVerboseLimit)
logf (LOG_LOG, "? %s", fname);
return 0;
}
}
if (!rGroup->recordType)
{
- if (rGroup->fileVerboseFlag)
+ if (records_processed < rGroup->fileVerboseLimit)
logf (LOG_LOG, "? record %s", fname);
return 0;
}
r = recordExtract (sysno, fname, rGroup, deleteFlag, fi,
recType, subType);
} while (r && !sysno && fi->file_more);
- log_event_start (NULL, NULL);
file_read_stop (fi);
if (fd != -1)
close (fd);